There is flooding in low-lying areas, which includes MTA trainyards in Coney Island and North-East Harlem, each near the water. For that and other reasons the subways are still down, I hope the city isn't punting on Monday and they at least put the buses back in service.
For those who think the flooding fears were unwarranted check out this photo from Chelsea near 11th ave by Scott Witt:
Still the dreaded storm surge of water, pushed in by the hurricane, aimed at the low seawalls of the waterfront, The Battery and the financial district didnt come as high as feared. There was flooding along the water's edge on the west side highway and other sea-leveled areas like Gowanus. Areas of Brooklyn and Queens that generally flood in big storms did again. And trees across the city are being uprighted or collected after being uprooted.
Overall we've weathered the storm and can get back to our personal calamities.
Be safe and have great day!